Hodges' Model: Welcome to the QUAD: biology

Hodges' model is a conceptual framework to support reflection and critical thinking. Situated, the model can help integrate all disciplines (academic and professional). Amid news items, are posts that illustrate the scope and application of the model. A bibliography and A4 template are provided in the sidebar. Welcome to the QUAD ...

Showing posts with label biology. Show all posts
Showing posts with label biology. Show all posts

Saturday, July 04, 2026

Tricotyledons, systems and social problems: TAKE ii iii iv

Act I, Scene 3 
'Thomasina What a faint-heart! We must work outward from the middle of the maze. We will start with something simple. (She picks up the apple leaf) I will plot this leaf and deduce its equation. You will be famous for being my tutor when Lord Byron is dead and forgotten.' p.31.

It appears that polycotyledon seed growth beyond tri-form is rare:

https://en.wikipedia.org/w/index.php?title=Cotyledon&oldid=1356872880

We must hope that the four-leaf clover is recognised and not just trampled underfoot.

One of the benefits of a four-leaf conceptual framework is that should you have the germ of an idea, you can reflect in (relative?) safety, exploring the conceptual ecosystem, its cognitive environs and nurture it to realisation.

n.b. In care making a difference, does not mean you have to be exceptional. ...

See post i: Tricotyledons, systems and social problems

https://hodges-model.blogspot.com/2026/07/tricotyledons-systems-humanities.html

Monday, March 30, 2026

Lavoisier: Math - Chemistry; Quantity, Quality, Principle ...

The philosophy of science, can not avoid being viewed historically, which leads us to learn how mathematics literally took hold, from physics, to chemistry and biology. The application of mathematics to chemistry provides many and ongoing insights:

'Curiously enough, Kant’s own student, Jeremias Benjamin Richter (1762-1807), would only a few years later disprove his professor with his PhD dissertation On the use of the mathematical method in chemistry (Richter 1789). It laid the groundwork for stoichiometry as an algebraic approach to chemistry, including what was later called the ‘law of constant proportion’ that John Dalton used for his atomism on chemical grounds (Richter 1792-3, Dalton 1808). Moreover, at the time of Kant’s writing, experimental philosophy was taking over most of the centers of European research to become the mainstream methodology of modern science, which would later denounce the ideal of a priori knowledge in science as ‘mere’ metaphysics. Although some philosophers of mathematical physics still adhere to that ideal today, Kant was a late partisan in the struggle for the methodological priority of mathematics in the study of nature as it was exemplified by the old field of ‘rational mechanics’. Yet, his view on science became marginalized as much as his verdict on chemistry, that it would be alien to mathematics, was refuted.'

The pitfalls presented and Schummer's 2.4 A methodological suggestion for defining mathematical chemistry are helpful.

Joachim Schummer. Why Mathematical Chemistry Cannot Copy Mathematical Physics and How to Avoid the Imminent Epistemological Pitfalls. HYLE--International Journal for Philosophy of Chemistry, Vol. 18, No.1 (2012). pp. 71-89https://www.hyle.org/journal/issues/18-1/schummer.htm

Maths is filled with tragedy, but the personal manifestation in my lack of ability, pales to insignificance to the many scientific and human tragedies history reveals. Consider Galois, and Lavoisier:

‘Only a moment to cut off that head and a hundred years may not give us another like it,’ lamented the 18th-century French mathematician Joseph Louis Lagrange. The head in question had belonged to the French aristocrat and chemist Antoine Laurent Lavoisier, who was executed at the hands of French revolutionaries on 8 May 1794. Lavoisier’s ideas changed the face of chemistry. He is best remembered for overthrowing the phlogiston theory, but perhaps his greater and more lasting achievement was to impose order on the language and symbolism that have shaped the thoughts of chemists.'

Paul Board, The Aristocrat who revolutionised chemistry, New Scientist. May 7, 1994 (Volume 142, Issue 1924). https://www.newscientist.com/article/mg14219243-300/

In an essay in the Charles Coulston Gillispie's essay in the history of scientific ideas, Chapter VI. The Rationalization of Matter, describes how Lavoisier sought to develop an algebraic approach:

'But what is most interesting is Lavoisier's mode of representing these results, so correct in quantity, so wrong in principle. In order to sec what he was about, one has to follow him into some detail. It is obvious, he writes, that acidification of a metal involves many variables-heat, concentration, chemical affinities, etc. each of which is a force acting with characteristic energy. Therefrom results a problem complex and difficult of solution: [my emphasis]

"Better to exhibit the state of the question in this respect, and in order to show at a glance the result of what happens in metallic solutions, I have constructed formulas of a sort, which could at first be taken for algebraic formulas, but which have not the same object, and do not derive from the same principles . . ."'

Gillispie, Charles Coulston. The Edge of Objectivity: An Essay in the History of Scientific Ideas. Princeton, N.J.: Princeton University Press, 1960.

Gillispie quotes at length to demonstrate Lavoisier's approach*. There is a more accessible (for me, here) source in -

Stefano Zambelli (2012). Chemical Kinetics, an Historical Introduction, Chemical Kinetics, Dr Vivek Patel (Ed.), ISBN: 978-953-51-0132-1, InTech, Available from: 
http://www.intechopen.com/books/chemicalkinetics/chemical-kinetics-an-historical-introduction

Please see page 6: 3. Chemical equilibrium conception: The law of mass action.

To close, there is reading and advice to be carried forward in:

Guillermo Restrepo & José L. Villaveces, "Mathematical Thinking in Chemistry". Special Issue: Chemistry and Mathematics, Part 1. HYLE--International Journal for Philosophy of Chemistry, Vol. 18, No.1 (2012). pp. 3-22. https://www.hyle.org/journal/issues/18-1/restrepo-villaveces.htm

Gillispie concludes his illustrated exploration of Lavoisier:

'Is this not the most tantalizing memoir in the history of chemistry, and in Lavoisier's the most appealing? Here alone, one gets a sense of modesty. He never claims for these expressions the dignity of algebra. "We are still very far from being able to introduce mathematical precision into chemistry, and I beg, therefore, that no one consider these formulas . . . as more than simple annotations, of which the object is to ease the labors of the mind." (But compare this disclaimer with what he says of algebra itself in the Method of Chemical Nomenclature: "Algebra is the analytical method par excellence: it was invented to facilitate the labors of the mind, to compress into a few lines what would take pages to discuss, and to lead, finally, in a more convenient prompt and certain manner to the solution of very complicated questions.")' p.245.

*in - Lavoisier, A.L. (1782). Considerations sur la dissolution des metaux dans les acides, Mémoires de l’Académie des sciences 1782, pp. 492-527, Available from http://www.lavoisier.cnrs.fr/ice/ice_book_detail-fr-text-lavosier-Lavoisier-49- 5.htm

Sunday, January 04, 2026

Biology, axioms, teleology and knowledge c/o Cox & Forshaw (2012)

'Teleological ideas generally have a rather bad reputation in science, and it's easy to see why. In biology, a teleological explanation for the emergence of complex creatures would be tantamount to an argument for the existence of a designer, whereas Darwin's theory of evolution by natural selection provides a simpler explanation that fits the available data beautifully. There is no teleological component to Darwin's theory - random mutations produce variations in organisms, and external pressures from the environment and other living thing determine which of these variations are passed on to the next generation. This process alone can account for the complexity we see in life on Earth today. In other words, there is no need for a grand plan and no gradual ascent of life towards some sort of perfection. Instead, the evolution of life is a random walk, generated by the imperfect copying of genes in a constantly shifting external environment. The Nobel-Prize-winning French biologist Jacques Monod went so far as to define a cornerstone of modern biology as "the systematic or axiomatic denial that scientific knowledge can be obtained on the basis of theories that involve, explicitly or not, a teleological principle".
As far as physics is concerned, there is no debate as to whether or not the least action principle actually works, for it allows calculations to be performed that correctly describe Nature and it is a cornerstone of physics. It can be argued that the least action principle is not teleological at all, but the debate is in any case neutralized once we have a grasp of Feynman's approach to quantum mechanics. The ball flying through the air 'knows' which path to choose because it actually, secretly, explores every possible path.' pp.52-53.


Cox, Brian, and Jeff Forshaw. (2012) Quantum Universe, the: Everything That Can Happen Does Happen. London: Penguin Books Ltd.

See also: 

Jacques Monod - https://www.informationphilosopher.com/solutions/scientists/monod/

Harrison, Peter. 2022. 'The History of Science and Theology', St Andrews Encyclopaedia of Theology. Edited by Brendan N. Wolfe et al. https://www.saet.ac.uk/Christianity/TheHistoryofScienceandTheology

Greslehner GP. "Molecular Biology"- Pleonasm or Denotation for a Discipline of Its Own? Reflections on the Origins of Molecular Biology and Its Situation Today. Biomolecules. 2023 Oct 12;13(10):1511. doi: 10.3390/biom13101511. PMID: 37892193; PMCID: PMC10605324.

Previously: 'axiom' : 'biology' : 'corner'

Saturday, December 28, 2024

Master Philosophy in Biology and Medicine (for Sept 1, 2025)

The Master Philosophy in Biology and Medicine at Bordeaux is looking for interested candidates for the next academic year (starting September 1, 2025).

This program (presented here: www.philinbiomed.org/teaching) is aimed at philosophy students who have a strong interest in working with scientists, or scientists who have a strong interest in working with philosophers, especially - but not exclusively - in the fields of cancer, immunology, microbiota, systems biology, nutrition, neuroscience and aging. Students will have the opportunity to be involved in research in scientific labs and to be integrated into a very dynamic international community of philosophers and scientists.

Please keep in mind that the Master's program is exceptionally inexpensive but very competitive (as we only recruit 5 students per year). The program is 100% in English.

A letter of motivation, CV, and a writing sample (~10 pages) concerning a relevant topic should be sent to mael.lemoine AT u-bordeaux.fr by March 24, 2025. Late applications may be accepted but will not be eligible for regular consideration.

Shortlisted candidates will be offered Zoom interviews during the month after the deadline.

Candidates will be informed of their acceptance by May 28th 2025 at the latest.

Interested students can contact us from now on or at their earliest convenience, using the following address: mael.lemoine AT u-bordeaux.fr.

Thanks for forwarding this information to anyone you think might be interested, and thanks again to those who have already done so!

Best wishes,

Université de Bordeaux

Fridolin GROSS
fridolin.gross AT u-bordeaux.fr
Maître de conférences (associate professor)
Laboratoire IMMUNOCONCEPT
Bâtiment Bordeaux Biologie Santé
2, Rue Dr Hoffmann Martinot

https://www.u-bordeaux.fr

My source:
Philos-L "The Liverpool List" is run by the Department of Philosophy, University of Liverpool https://www.liverpool.ac.uk/philosophy/philos-l/ Messages to the list are archived at http://listserv.liv.ac.uk/archives/philos-l.html.

Follow the list on Twitter @PhilosL. Follow the Department of Philosophy @LiverpoolPhilos 

Sunday, October 06, 2024

[v] Book: The Systems View of Life - A Unifying Vision

The Systems View of Life -
A Unifying Vision


Part IV begins with the ecological dimensions of life. There's a reminder that ecology, comes from the Greek 'oikos' for "household". We need this -

move you rubbish (don't leave it in the first place), wipe your feet; switch the lights off when not in use, assuming you have them!; close and open the windows as needed; think less 'location, location, location' and having a home.

Given the pictorial form of Hodges' model - mind-mapping - I've always been attracted to diagrams, no-less here the pioneering work of the Odum brothers and 'Odum flow diagrams' which even today are an ecological currency in the literature (p.344-45). An update on ecosystems as dissipative structures and as autopoietic would be helpful. Of course, now for scholars and students have search terms then resources and learning can follow. While ozone depletion is acknowledged, the role of the atmosphere could possibly be (briefly) expanded (guest essay, box?), in-particular the role of the Van Allen belts and the fact of Earth's magnetic field and (still) molten core. 16.2.3 definitely points the way pp.348-351.

16.3.1 Defining sustainability - made me sit up. Lester Brown's 1980's work is not referenced in:

Jones P, Wirnitzer K. Hodges’ model: the Sustainable Development Goals and public health – universal health coverage demands a universal framework. BMJ Nutrition, Prevention & Health 2022;5:doi: 10.1136/bmjnph-2021-000254 (From the bibliography listing in the sidebar of this blog.)
It was Brown who defined sustainability, and the question is ongoing regards how to build a sustainable society (p.352). Key as Capra 2002 notes is that a sustainable human community would not interfere with nature's inherent ability to sustain life. Ecological literacy 16.3.2 was also welcome; a constant theme on this blog, given the many claimed forms of literacy, as with (schools of) informatics. The informational perspective can reveal its power across literacies and informatics, consider media and information literacy? A way to paraphrase the authors: "The market and the marketplace is information disordered." (p.354).

Three chapters include descriptions of agencies (with links) that work with knowledge in an interdisciplinary way; where ecological and spiritual dimensions of education are emphasized; and in chapter 18 several other centers of learning. Chapter 16 looks at organisations with a focus on ecoliteracy in schools, colleges and universities. Checking some of the links many are ongoing - alive!
Struck in the past by the original approach of Goethe to 'science', his work on patterns is described in the introduction and here in relation to the arts and curricula. You will find 'art' sprinkled throughout the posts on W2tQ. Key concepts are described networks, flows, cycles, nested systems, dynamic balance, and development. Chapter 17 joins the dots of the world's problems. 'Growth' appears a disposable term, in how it is applied and so little understood, even by politicians and policy makers? Recent UK politics is a prime example. There is a another concurrent thread (to informatics and literacy) on this blog, as it is inbuilt, hard and soft-wired into the structure of Hodges' model. It is dichotomy, polarity and oppositions, specifically, objective - subjective, quality - quantity.
'In fact, the new systemic conception of life makes it possible to formulate a scientific concept of quality. It seems that there are two different meanings of the term - one objective and the other subjective. In the objective sense, the qualities of a complex system refer to properties of the system that none of its parts exhibit. Quantities like mass or energy tell us about the properties of the parts, and their sum total is equal to the corresponding property of the whole - e.g., the total mass or energy. Qualities like stress or health, by contrast, cannot be expressed as the sum of properties of the parts. Qualities arise from processes and patterns of relationships among the parts. Hence, we cannot understand the nature of complex systems such as organisms, ecosystems, societies, and economies if we try to describe them in purely quantitative terms. Quantities can be measured; qualities need to be mapped (see Section 4.3).
With the recent emphasis on complexity, networks, and patterns of organization, the attention of scientists in the life sciences has begun to shift from quantities to qualities, and there has been a corresponding conceptual shift in mathematics. In fact, this began in physics during the 1960s with the strong emphasis on symmetry (see Section 8.4,3), which is a quality, and it intensified during the subsequent decades with the development of complexity theory, or nonlinear dynamics, which is a mathematics of patterns and relationships. The strange attractors of chaos theory and the fractals of fractal geometry are visual patterns representing the qualities of complex systems (see Sections 6.3 and 6.4). 

In the human realm, the notion of quality always seems to include references to human experiences, which are subjective aspects. This should not be surprising. Since all qualities arise from processes and patterns of relationships, they will necessarily include subjective elements if these processes and relationships involve human beings.' pp.368-369. (My emphasis - and encouraging for research and researchers in Hodges' model)
The authors point out how the conjoining of 'sustainable development' is problematic when viewed in qualitative and quantitative terms (17.2.2 pp.369-371). I wonder what Capra and Luis would make of the SDGs and the metrics employed today? This has been an issue (reading for Jones & Wirnitzer, 2022), with measures needing to catch up and the disruption of COVID. There really is a case for economic literacy for people globally, as 'freedom' is so readily passed-off - associated with economics and trade as a 'right'. Another potential update revolves around globalisation, what would they make of Doughnut economics?

An additional risk now are the bitcoin factories and energy needed to drive AI data-processing. How transparent are global corporations in declaring their energy use? The LIBOR scandal is raised, but what the cost involved in Bankman-Fried and FTX-Alameda Research fraud? Capitalism is built on speculation and always will be? But if we defer 'paying' for economic transformation in a decade the costs will rapidly increase. Capra and Luis acknowledge the need to think about future generations. An ethical stance that is, thankfully, changing policy, and deserves attention.

I pencilled in the margin - what is the conclusion of the lesson of Argentina? Do the economists, the IMF, the World Bank, the Argentinian people know? What of the economic predilections of other nations? Who are the exemplars, the pioneers? Must Africa follow the West's bad-habits? Can they leap-frog technologies (land-lines, fossil fuel reliance ...)? I understand they are! In the West, do we need to re-invent public information services, to address the prevailing mindset? Even as the financial industry has passed-through a 'quant' phase, but mathematics still (and will always) hold sway (p.379).

Page 381 reminded me of the need for gainful employment, and how this is threatened and has always been threatened by technology (very broadly defined). The varied forms of parity of esteem become evident not just in health (mental - physical); education (technical - vocational), but employment too, especially with automation and artificial intelligence. The decade since the book was published leaves room for new content: what might replace or complement The Occupy Movement, The Seattle Coalition? The socio-political rate of change is remarkable. Greta Thunberg and Extinction Rebellion, for example, are clearly post-publication. The claimed rationale for business as usual in 'trickle down economics' remains relevant (sadly) p.384. More could be made now of the two numbers - 565 gigatons and 2,800 gigatons of carbon (350.org); and the current debate on carbon capture (Ah! p.408). 

I have over the years associated the intra- interpersonal domain with the individual's cognition, reasoning, logic, intellect, thought, and education. Collectively though we need to invert this:

individual
|
INTERPERSONAL : SCIENCES
humanistic ------------------------------- mechanistic
SOCIOLOGY : POLITICAL
|
group
education
EDUCATION

EDUCATION
EDUCATION


It is essential for every person to be informed were possible, to get to this situation (e.g. this book in a sense is an appeal for the public's understanding of science; and our political leaders):


individual
|
INTERPERSONAL : SCIENCES
humanistic ------------------------------- mechanistic
SOCIOLOGY : POLITICAL
|
group
EDUCATION
EDUCATION

EDUCATION
ANOTHER WORLD
IS POSSIBLE!



Chapter 18 pulls everything together (and provides HOPE) in systemic solutions. The previous post:

- drew on this chapter (p.398). I didn't realise 'commercial speech' is protected in the USA. 

As expected - a moral compass is still needed (p.430). I really the section on acroecology. It might be an idea to read this final chapter first. If there is a response to the question (there's no answer) as to why we are here - this is it. Biotech has its section, genetic engineering, the scope and risks, as does, the third industrial revolution, citing Rifkin's five pillars (2011). Agribusiness, world hunger, and the twelve myths:

'At a time of unprecedented wealth, when almost one-half of all Americans own stocks and are able to watch their wealth and economic power grow on the nightly news, it is good to remember that over 800 million people worldwide are passing the same nights unable to feed themselves and their children. A full quarter of other Americans, especially children, have much in common with the world’s hungry, experiencing their own hunger intermittently. Frances Moore Lappe and co-authors Joseph Collins and Peter Rosset in World Hunger: 12 Myths are there to remind us. Remind us of the plight of the world’s hungry, as Frances Moore Lappe has done for over 20 years, and remind us too that there is enough food; that hunger is not necessary; that hunger is a social creation; hungry people a social phenomenon, and consequently one that depends on us and that we can change.'

https://www.worldhunger.org/world-hunger-12-myths/ 

The chapter and book closes with a meditation regards hope. A comprehensive bibliography and index follows.

Despite the age of this book it has proved well-worth reading. I am glad I pursued my original request for a review copy. Well recommended and I wonder if there would be another edition? Clearly this would take a great effort, but then needs must? I will revisit the chapter on health. In the past week, the  the UK's last coal power plant closed (BBC News). Change is happening. And the weather globally of recent months cannot be denied. 

My thanks are extended to the team at Cambridge University Press for the paperback copy.

Fritjof Capra and Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press.

https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366



Tuesday, October 01, 2024

[iv] Book: The Systems View of Life - A Unifying Vision

The Systems View of Life -
A Unifying Vision



If you are about to start studying biology, Part 3 'A new conception of life'  is an excellent introduction to some broad and yet pivotal concepts. I haven't checked the 'current' curricula for biology or human biology, but I suspect there is content provided that may be missing? How are biology curricula characterised? If the 'subject' is comprehensively covered at school - college, there may still be value in the way in which they are presented in TSVoL. And, yes the book is a decade old. There's a step-wise development, that is coherent and fascinating.

The opening sentences to chapter 7, which asks 'What is Life?' :

'7.1 How to characterize the living

It is a common understanding that it is impossible to provide a scientific definition of life which is universally accepted. This stems from the fact that the background of scientists dealing with the question - biologists, chemists. computer scientists, philosophers, astro-biologists, engineers, theologians, social scientists, ecologists differs considerably from one another, depending on one's conceptual framework. In this book, we will not dwell so much on the question of a unique definition of life a single sentence catching all the various aspects of life - but rather, we will consider the more general question: what are the essential characteristics of a living system?' p.129.

- for some reason puts me in Plato's Cave? Maturana and Varela would (and do) have very broad shoulders by now. Autopoiesis is described with structure, systems (of course), self-maintenance, nonlocalization, coupling, and emergent properties. 'Life is a factory that makes itself from within'. p.132. Well that will do me. Even though we talk of political, social and psychological processes, I've always associated the SCIENCES domain of Hodges' model with processes. This includes whether the processes are biological, manufactured by human hand/intellect, such as, industrial working, project management and planning.

For life, initial descriptions concern the cell, DNA, RNA, cell walls and the cellular logic of life. Key is life's interaction with the environment. This is emphasised 7.2.4 and 7.4. I gained a lot of encouragement from:

'According to Maturana and Varela (1980, 1998), the organism interacts with the environment in a "cognitive" way whereby the organism "creates" its own environment and the environment permits the actualization of the organism.' p.134.

It is not just mind - but 'embodied mind'. The joy (for Hodges' model) continues with the impact of social autopoiesis in the social sciences.  

'While behaviour in the physical domain is governed by the "laws of nature,' behavior in the social domain is governed by rules generated in the social system itself.
Thus, two questions arise: is it meaningful to apply the concept of autopoiesis to these domains at all, and, if so, to which domain should it be applied?' pp.136-37.

It's almost like Descartes has taken on a quantum property. We don't know when life is physical (time, space, velocity) and when it is mental - cognitive? Contemplating life, death is never far behind (taxes p.419 if you're wondering). The ethics of death and dying are acknowledged in medical intervention (or not) and religious beliefs and edicts. Again the figures are helpful, illustrating the dynamic modes of an autopoietic unit: homeostasis, reproduction, and death of a cell (p.138). The trilogy of life then is also illustrated as environment, cognition, and autopoietic unit (p.142). When it comes to knowledge domains (social science & ecology) are clearly ubiquitous too.

Concepts of Modern Mathematics
Ian Stewart, 1975

It is Chapter 8 that delivers the biological goods. Beginning with a fascinating account of molecular, or prebiotic evolution, giving rise to biological structures and the interplay of soaps and lipids - "amphiphilic" substances, with molecules that contain a hydrophilic (water loving) head group, and long hydrophobic (water-hating) chains. Well illustrated too, box 8.1 describes 'Surfactants, lipids, and liposomes'. Self-organization, emergence are skillfully threaded together and with creativity - the generation of new forms. Unsurprisingly, Gaia is highlighted 8.3.3 and in a guest essay 'Daisyworld' by Stephen Harding of Schumacher College; which also reminded me of the 1970's BBC drama 'Edge of Darkness'. Maths has another turn in the text; a chiral one. Biomathematics is posited as a new mathematics frontier: here - the numerology of plant growth, the golden section (there's one primary context?), nature's spirals, and symmetry breaking. This helps my current return to maths (the struggle!) trying to get to grips with basic concepts. Ian Stewart is cited, later work than 1975's 'Concepts' I must seek out the 'Mathematics of Life' 2011/12.

Darwin, the resulting biological revolution, history, polymers, peptides and proteins plus DNA and RNA continue a suitably in-depth treatment of 'life' in chapter 9. The conclusion on Darwinism today and the status of genes in science and relation to our identity, being and the effect of chance and contingency is worth being reminded of. In mental illness - psychiatry and psychology a sometimes vitriolic debate continues.  Commercial realities are also apparent, the extent of their influence described: the race to map the human genome. In the text protein folding has advanced markedly since the book's original publication. Now new commercial pressures allied with artificial intelligence make you wonder how the author's would deal with this new 'content'? Exobiologists will enjoy chapter 10 as the focus is planetary: the origins of life on Earth. Useful, basic chemistry figures here - informational and functional (concentration). The notion of 'cognitive' is raised again - information carrying. 

While we are concerned for all life, chapter 11 takes in the human adventure, including the determinants of being human. 'Determinants' have taken on more import today. Chapter 12 in addressing 'Mind and consciousness' is helpful in the approach, the easy and hard problems of consciousness, types of consciousness, schools study. There is another guest essay. Chapters 13-15 deal with spirituality (inc. eco-literacy); life mind and society (I wonder if topology does have a role in the mental realm? (p.311). Chapter 15 is a gift for healthcare professionals - 'The systems view of health' with the question, 'What is health?'. Not to diminish this statement, but I will return to this subsequently; whether in the closing post for this 'review,' or afterwards. This completes part III of what is a great read.

Many thanks again to CUP for the paperback copy, much easier on the eyes. While this copy is new, I do make extensive use of secondhand books.

Fritjof Capra and Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press.

https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366



Sunday, September 22, 2024

Book: [iii] 'The Systems View of Life - A Unifying Vision'

The Systems View of Life -
A Unifying Vision


Part 2 addresses the title - the rise of systems thinking.

The part - whole distinction is not only the root of the reductionism - holism and analysis - synthesis debates, but you feel clever knowing what mereology means ;-). This book is jargon free, even while being detailed and technical when necessary. Terms are defined when needed.

You see (possibly?) the power of advertising given the prominence of vitality in marketing. Meanwhile, vitalism a key to life seems to be an unknown, ever present but in the shadows, until our attention is drawn to it (health: life-death). Capra and Luisi explore mechanism and vitalism, and in turn organismic biology. Whether dealing with science, economics, biology..., I like the way the authors draw in the initial thinkers, the pioneers: whose lives, work and influence often spanned the 19th and 20th centuries. 

The proof of my opening statement in post (i) can be found on page 66:

'Systems thinking is "contextual," which is the opposite of analytical thinking. Analysis means taking something apart in order to understand it; systems thinking means putting it into the context of a larger whole.' p.66.

Ever user(s)-determined (context-based), Hodges' model can readily identify, relate, incorporate the - linear, non-linear, serial, parallel, simple, complex, poor, rich, narrow, broad, static, dynamic, person, service and so on. Also on page 66, Ehrenfrels (1859-1932) is an example, the first to use the term gestalt to denote an 'irreducible perceptual pattern'. There are many potentials within Hodges' model, one of which is that of gestalt. Yes, in healthcare we need to see the whole. We need to see the person, but also see the person in their social, political and spiritual contexts ('determinants)'. Now the global context is critical.

Chapter 4 charts the new physics atomic phenomena, mysticism, uncertainty, probability, causality, space, time, energy, and E=mc2. As per the book's subtitle, the search for a unifying theory in physics is noted, and ongoing. Box 4.1 briefly outlines the characteristics of systems thinking; including parts-whole, from objects to relationships and measuring to mapping. Within box 4.1, figure 4.1 reminds me of a Voronoi tessellation.^ From chapter 5 can I claim that Hodges' model is tektological - contributing to the science of structures? One day perhaps this Russian contribution to systems thinking can be looked at anew? Chapter 5 continues to reveal classical systems theories, general systems, cybernetics, feedback - in social systems too, and homeostasis - self-regulation. It's less than a page spanning 92-93,  but 'information theory' is duly noted, closing with cybernetics in the brain, and the emergence of self-organization. Shannon showed that even when there is noise in a communication channel, signals can be transmitted (coding). Is this why training and competence in interpersonal skills and self-awareness are so important, to help health professionals to attend, actively listen, and observe?*

An old T-shirt 'Art Matrix'


Chapter 6 on complexity theory, inevitably describes mathematical ideas providing equations. Unsurprisingly chapter 6 has figures galore. When I unpack the boxes and crates, I must sit down with The Beauty of Fractals ... (p.124!) and check the graphic capabilities of the latest software and hardware. The 'The Systems View of Life' definitely stimulates further enquiry. The baker transformation anyone (Box 6.2, p.107)? Exploration of non-linear dynamics, and abstract spaces also helpful in studies of relations and maths. This completes part II.


Many thanks again to CUP for the pb copy, much easier on the eyes. While this copy is new, I do make extensive use of secondhand books.

Fritjof Capra and Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press.

https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366

^See: https://blogs.helsinki.fi/fcai-sig-lsc/files/2022/04/Peter-Gardenfors.pdf and 'conceptual spaces'

*Jones, P. (1996) Humans, Information, and Science, Journal of Advanced Nursing, 24(3),591-598.

Jones, P. (1996) An overarching theory of health communication? Health Informatics Journal,2,1,28-34.

Friday, September 20, 2024

Book: [ii] 'The Systems View of Life - A Unifying Vision'

The introduction highlights the oscillation through history between reductivism, holistic and integrative perspectives; the relationship between theology and the claims for and crystallisation of knowledge and the sciences. The development of cybernetics and systems theory in the 1950s and 1960s does not have it all its own way: 

'The eclipse of systems thinking from pure science had become so complete that it was not considered a viable alternative. In fact, systems theory began to be seen as an intellectual failure in several critical essays. One reason for this harsh assessment was that Ludwig von Bertalanffy (1968) had announced in a rather grandiose manner that his goal was to develop general systems theory into "'a mathematical discipline, in itself purely formal but applicable to the various empirical sciences.'' He could never achieve this ambitious goal because in his time no mathematical techniques were available to deal with the enormous complexity of living systems.' p.11.

(With Zeeman's book on Catastrophe Theory on-loan at present the above is helpful.)

I've picked up a book of Arne Naess's, put it down again: or did I buy 'The Ecology of Wisdom'? I can't check at present (the books I've left are all boxed / created), but Naess sets the scene for the mechanistic worldview.

'Care flows naturally if the 'self" is widened and deepened so that protection of free Nature is felt and conceived as protection of ourselves. .. Just as we need no morals to make us breathe... [so] if your "self" in the wide sense embraces another being, you need no moral exhortation to show care.. . You care for yourself without feeling any moral pressure to do it. (quoted by Fox, 1990, p. 217)
'What this implies, according to the eco-philosopher Warwick Fox (1990), is that the connection between an ecological perception of the world and corresponding behavior is not a logical but a psychological connection. Logic does not lead us from the fact that we are an integral part of the web of life to certain norms of how we should live.' p.14.
Science fiction gives you an appreciate of 'deep', even if not initially the philosophical connotations. Deep space, A.C. Clarke's Deep Range, and more recently deep time brought me to consider deep care on the old website and here on W2tQ with Hodges' model a means of navigation. Naess refers to shallow and deep ecology. Now we also have deepfakes, although the climate change deniers may struggle to believe their deepfake - that is: reality.  Although the book was published pre-sustainable development goals, sustainable development is discussed in detail. For me, the climate change and the SDGs demand we consider ecology, ecosystems, life, and the Earth across the domains of Hodges' model and the spiritual explored in chapter 13.
 
individual
|
INTERPERSONAL : SCIENCES
humanistic ------------------------------- mechanistic
SOCIOLOGY : POLITICAL
|
group




shallow
|
DEEP






A table on page 13 contrasts several opposites across thinking and values:



As usual, I can't shift beyond the book's introduction, but these points for me underscore the value of the book and Hodges' model. Throughout the blog and papers various dichotomies, polarities, oppositions arise. The structure of Hodges' model lends itself to this, and consequently finding the middle. All the above can be reflected upon in relation to Hodges' model, and also searched.

Chapter 1 explains how the discoveries of Galileo, Descartes, Bacon, Newton and Darwin contributed to the world and life - in biology being viewed mechanistically. The focus of the book is 'Western' and the developed nations; as the main contributor to the current state of the planet. The Cartesian divide - mind & matter/body distinction (p.24) is implicit within Hodges' model:

individual
|
INTERPERSONAL : SCIENCES
humanistic ------------------------------- mechanistic
SOCIOLOGY : POLITICAL
|
group

res cogitans


res extensa





Newton's work is described and the limitations of Newtonian physics - the social sciences presented a challenge(!). Thermodynamics is introduced helpful for subsequent chapters.

For general science students the book provides a historical primer, and even an introduction to the philosophy of science. Chapter 2 is short but conjoins cells, molecules, genes (Mendel, Watson & Crick; Franklin & Wilkins, and others), and mechanistic medicine. 

'This will not change until medical science relates its study of the biological aspects of illness to the general physical and psychological condition of the human organism and its environment, The conceptual problem at the center of contemporary healthcare is the confusion between disease processes and disease origins. Instead of asking why an illness occurs and trying to remove the conditions that led to it, medical researchers try to understand the mechanisms through which the disease operates, so that they can then interfere with them. These mechanisms, rather than the true origins, are seen as the causes of disease in current medical thinking. In the process of reducing illness to disease, the attention of Physicians has moved away from the patient as a whole person.' p.43.

Thinking about this in basic instrumentalist terms the reliance on optics, the craft of telescopes and microscopes to discover the very large (our Milky Way as 'a' galaxy) and the invisible - germs, bacteria must have been a profound factor.

If you are selecting subjects for age 16 exams, do not underestimate the value of SOCIO-ECONOMIC history. It has helped me as a community mental health nurse. Especially in light of austerity (UK), the cost of living and energy crisis and the 'housing disaster' (book 2024 with) posts to follow. Chapter 3 uses b&w illustrations of key figures, such as, Locke, Adams, and Marx. I remember in the media, economics education being questioned. That is part 1: concise (p.59!) and yet still relevant today.

Many thanks again to CUP for the pb copy.

Fritjof Capra and Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press.

https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366

Wednesday, September 18, 2024

Book: 'The Systems View of Life - A Unifying Vision' [i]

The Systems View of Life -
A Unifying Vision
Published in 2014; I needed this book in the early 1990s, as did we all.

As a review request I'm grateful to CUP for forwarding a copy - that is much easier on the eyes than a screen. This book deserves a much longer-tail.

Reading Resurgence for many years, joining The Ecology Party before they turned Green, and aware of systems, cybernetics this book has brought a great deal together. It has helped me in further thought and formulation about Hodges' model: A system of systems? 

Since 2014 clearly much has changed, I will highlight points where a new edition would be welcome. Although CUP and the authors could find themselves frenetic, such we hope is the pace of change now - or from now on, especially pre-COP29?

Come on petro-states it's time to really deliver.

Even in paperback this book is a reassuring handful, running to 452 pages, excluding the bibliography and index. Part 1 reinforced the encouraging signs in the introduction:
'The basic tension is one between the parts and the whole. The emphasis on the parts has been called mechanistic, reductionist, or atomistic; the emphasis on the whole, holistic, organismic, or ecological. In twentieth-century science, the holistic perspective has become known as "systemic" and the way of thinking it implies as "systems thinking,'' as we have mentioned.

In biology, the tension between mechanism and holism has been a recurring theme throughout its history. At the dawn of Western philosophy and science, the Pythagoreans distinguished "number," or pattern, from substance, or matter, viewing it as something which limits matter and gives it shape. The argument was: do you ask what it is made of - earth, fire, water, etc. - or do you ask what its pattern is?' p.4.
  • Preface
  • Acknowledgements
  • Introduction: paradigms in science and society
  • Part I. The Mechanistic World View:
    • 1. The Newtonian world-machine
    • 2. The mechanistic view of life
    • 3. Mechanistic social thought
  • Part II. The Rise of Systems Thinking:
    • 4. From the parts to the whole
    • 5. Classical systems theories
    • 6. Complexity theory
  • Part III. A New Conception of Life:
    • 7. What is life?
    • 8. Order and complexity in the living world
    • 9. Darwin and biological evolution
    • 10. The quest for the origin of life on Earth
    • 11. The human adventure
    • 12. Mind and consciousness
    • 13. Science and spirituality
    • 14. Life, mind, and society
    • 15. The systems view of health
  • Part IV. Sustaining the Web of Life:
    • 16. The ecological dimension of life
    • 17. Connecting the dots: systems thinking and the state of the world
    • 18. Systemic solutions
  • Bibliography
  • Index
This is an excellent primer for students of biology - human biology, including eager learners in secondary school - there is technical discussion that can serve as initial exposure to new terminology, extending vocabulary. The scope of the book however covers all academic subjects, chemistry, physics, anthropology, sociology, general studies, economics and of course ecology, environmental studies.

The book is clearly well-designed and presented. Readable generally and when dealing with technical concepts. Each chapter benefits from illustrations and use of boxes, with short guest essays introduced throughout. There is less reliance on tables. Each chapter is well referenced, and towards the end chapters 17-18 urls are provided. Obviously, the references and urls are dated now; a matter we will return to. Despite the passing decade, the quality of the book still shines through.

I just noticed the cover is attributed to Andy Goldsworthy 1988, Derwent Water, Cumbria and remember out with the family, coming across Goldsworthy's work in Grizedale forest.

I will share news of my reading over several posts and many other connections.

Many thanks to CUP for the hard copy - which has been an informative companion - over the past 4-6 weeks.

Fritjof Capra and Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press.

https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366

Saturday, May 11, 2024

Summer reading and books for review

I look forward to reading and reviewing these books. Many thanks to:

  • Tom Griffiths - Julian Richer's office
  • CUP
  • Springer Nature Customer Service

Julian Richer (Author), Kate Miller (Editor) (2024) Our Housing Disaster: - and what we can do about it. London: Richer Publishing and Media. 
https://www.richersounds.com/our-housing-disaster.html

Joaquim Braga & Mário Santiago de Carvalho (eds.) (2021) Philosophy of Care - New Approaches to Vulnerability, Otherness and Therapy. Cham: Springer Verlag.
https://link.springer.com/book/10.1007/978-3-030-75478-5

I will advise on how / whether informs my online presentation this coming week at:


Fritjof Capra, Pier Luigi Luisi (2014) The Systems View of Life - A Unifying Vision. Cambridge: Cambridge University Press. 
https://www.cambridge.org/gb/universitypress/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/systems-view-life-unifying-vision?format=HB&isbn=9781107011366 

All three could have a role to play?

Friday, March 01, 2024

'Writing Samer'

Molly Fairhurst
 

... across the domains

"Diagnosed with a terminal cancer, Samer Iskandar couldn't find the words to describe what he was living through. Instead, he proposed an unusual collaboration." p.33.

 


Individual
   |
      INTERPERSONAL    :     SCIENCES               
HUMANISTIC  --------------------------------------  MECHANISTIC      
 SOCIOLOGY  :   POLITICAL 
|
Group

"Samer's cancer^ is like all cancers in that it pitches the self into a battle against the non-self, - *


"Memory, language, attention and cognition all erode to ultimately leave you somewhere east of your prior self and west of someone new." p.34.




- atavistic alien cells invading their host from within. But it is unlike most cancers in how directly this cellular plunder correlates to the personal one." 

It is like all cancers in that its lexical field is that of topography, malignancies spreading, diffusing and gaining ground. It is unlike them in that these movements are finally technical, gears cramped within the clock of a terminal diagnosis." p.34.





^glioblastoma
*discuss

Youmna Melham Chamieh, Writing Samer, FT Weekend Magazine, 24/25 February, 2024, Issue 1,062, pp.32-37.

Illustrations by Molly Fairhurst
https://mollyfairhurst.com/Financial-Times (above source).

Thursday, January 11, 2024

Identity - a combination of forms and (hence) experiences

Continuing to sort books, magazines ... I realised in the autumn that I'd need to return to issue #72 of The Philosopher's Magazine and its theme of  '50 New Ideas'. ...

INDIVIDUAL
  |
     INTERPERSONAL    :     SCIENCES               
HUMANISTIC --------------------------------------  MECHANISTIC      
SOCIOLOGY  :   POLITICAL 
|
GROUP

"Who are you? Who am I? Are we persons and if we are, are we the same persons we were yesterday? What does our being persons consist in? These are the sorts of questions philosophers try to answer on the nature of personal identity, the persistence question. The persistence question is often considered the question of personal identity: what are the conditions under which a person who exists at time t1 is identical to a person who exists at time t2?" p.51.

"A new wrinkle in this debate is owed to Lynne Rudder Baker: the not-so-simple view of personal identity. Baker identifies persons with 'the first-person-perspective'. The answer to the question 'who am I?' is that I am the perspective I have of myself, and my persistence conditions are first-personal." p.52. [Grain, K.]


"Microscopes have revealed an invisible world to us and whether from secondary school science or probiotic yoghurt adverts most of us are now familiar with the idea that our bodies host a plethora of variously beneficial bacteria. These tiny creatures, which live inside us, contribute to our lives; they help us digest food and bolster our physiological defences against harmful presences - other bacteria and viruses. These 'endo-symbionts' participate in our living activity, just as we contribute to theirs in providing them with nutrients and a stable environment. The philosophical question this raises - belied by the talk of 'our' bodies and 'our' insides - is: where exactly do our organic boundaries lie?" p.49. [Ferner, A.M.]

Social foundation / scaffold
Political foundation / scaffold




Ferner, A.M., Organic identity, pp.49-50 - and 

Grain, K., Personal identity, pp.51-52 -

In The Philosopher's Magazine, "50 New Ideas", 1st Quarter 2016. Issue 72.

There is a 'simple' take-away message (thought!) here. It is the way, through its structure that Hodges' model provides a means to reflect, critique, debate and relate the self with the collective: and situate them and other concepts.

See also:
Nov. 2023: Hodges' model - as 'a' philosophy c/o TPM

Thursday, August 31, 2023

The need for Holism 2.0 ... (c/o Porter, 1997)

 or 4.0?

"Disease became conceptualized after 1900 as a social no less than a biological phenomenon, to be understood statistically, sociologically, psychologically - even politically. Medicine's gaze had to incorporate wider questions of income, lifestyle, diet, habit, employment education and family structure - in short, the entire psycho-social economy. Only thus could medicine meet the challenges of mass society, supplanting outmoded clinical practice and transcending the shortsightedness of a laboratory medicine preoccupied with minute investigation of lesions but indifferent as to how they got there. It was only radicals and prophets who appealed to a new holism - understanding the whole person in the whole society; respected figures with the temple of medical science, including Kurt Goldstein (1878-1965) and René Dubos (1901-82), author of Mirage of Health (1959), were emphatic that the mechanical model of the body and the sticking plaster formula would at best palliate disease (too little, too late) but never produce true health." p.634.


Roy Porter, The greatest benefit to mankind: a medical history of humanity from antiquity to the present, London, HarperCollins, 1997.

INDIVIDUAL
|
     INTERPERSONAL    :     SCIENCES               
HUMANISTIC --------------------------------------  MECHANISTIC      
SOCIOLOGY  :   POLITICAL 
|
GROUP


"The psychiatrization of everything occurred first in the United States. It was a trend deliciously mocked in some of Stephen Sondheim's lyrics to West Side Story (1956), in which the crazy mixed-up New Yorkers taunt the police officer on the warpath:

Officer Krupke, you're really square;
This boy don't need a judge, he needs an analyst's care!
It's just his neurosis that oughta be curbed,
He's psychologic'ly disturbed.
We're disturbed, we're disturbed, we're the most disturbed,
Like we're psychologic'ly disturbed. " p.519.

Socio-Economic Determinants of Health
Social Justice
History
Culture

Police
'the Law'
Mental Health Act
Political determinants of Health


Image - frontispiece in Porter's book "Renaissance anatomical illustrations often followed artistic conventions (situating the skeleton in a lifelike pose in a landscape) and played wittily on the tensions between life and death. The contemplating of the skull prefigures Hamlet's later meditation. Line drawing, Valverde de Hambusco, Historia Historia de la composicion del cuerpo humano, Roma, 1556."

Image source:
https://www.royalacademy.org.uk/art-artists/work-of-art/lateral-view-of-male-skeleton

Thursday, July 06, 2023

Paper: "How can we mainstream mental health in research engaging SDGs? -

A theory of change." i

This paper caught my eye on twitter, quite a while ago - the combination of mental health and SDGs:

Madill A, Bhola P, Colucci E, Croucher K, Evans A, et al. (2022) How can we mainstream mental health in research engaging the range of Sustainable Development Goals? A theory of change. PLOS Global Public Health 2(8): e0000837. https://doi.org/10.1371/journal.pgph.0000837

"The recently updated WHO Comprehensive Mental Health Action Plan 2013–2030 [1] concurs with this vision in that two of its six cross-cutting principles are: (i) a multi-sectoral approach, and (ii) action on social determinants. This acknowledges that “integrating mental health across wider sectors such as education, employment and social welfare helps address social determinants of mental health and ensures a comprehensive and holistic approach” [7 p12]. Shen, Eaton and Snowden [8] investigated mental health mainstreaming in 42 countries in terms of a shift towards providing mental health care from institutional to community settings. They concluded that “different countries have adapted deinstitutionalization in ways to meet idiosyncratic situations and population needs” [7 p313] and that more needs to be done with regard to management and implementation strategies. While the keyword for Shen, Eaton and Snowden [8] is ‘deinstitutionalisation’, for Gómez-Dantés and Frenk [9] it is ‘integration,’ and they provide a dimensional approach with regard to what is involved in mainstreaming mental health: “(i) incorporating mental disorders to the global and local agendas related to NCDs [non-communicable diseases]; ii) moving away both from the biological and sociological reductionisms around mental health prevalent in the past century; iii) addressing the whole range of conditions related to mental health; iv) migrating from the idea that mental diseases have to be treated in secluded clinical spaces; and v) expanding the use of a comprehensive approach in the treatment of these disorders, which includes medication, psychotherapy and other types of therapies” [9 p214]." p.2/23

Selected concepts are related to Hodges' model below. In addition to the 2x2 table below, it may be useful for visitors to consider the paper's figures against the model? There is no doubt an overlap across the care / knowledge domains of Hodges' model, but hopefully the 'holistic bandwidth' of the model and its potential as a generic conceptual framework will also be highlighted. 

Note for example the way mention of 'clinical' tends to attract care (understandably) to clinics, hospitals, institutions, controlled (mechanistic) spaces where resources can be controlled and concentrated. Additionally, to find appropriate concepts, we must appreciate how 'local' is applied not only geographically, regionally, but culturally also - within and across a community, or several.

Hodges' model provides several disciplinary bridges of relevance here:
  • psycho-political
  • psycho-social
  • socio-economic
  • socio-political
  • bio-social
I will revisit the paper again soon ii.

INDIVIDUAL
|
INTERPERSONAL    :     SCIENCES               
HUMANISTIC --------------------------------------  MECHANISTIC      
SOCIOLOGY  :   POLITICAL 
|
GROUP

intra-personal - mental health 
(contribution to individual's
overall health status)

self advocacy

qualitative evidence

mental health practitioners

psychotherapy, counselling

individual health literacy/education

"Implications for researchers include: recognising the potential of their projects to have psycho-

quantitative evidence

time, environment, geography - locale

treatment

resources (time and physical - space)

digital technologies

'clinical' seclusion spaces

multiple locally-appropriate concepts

'clinical spaces' seclusion/isolation

 -social wellbeing impact"*


"collaborating with local communities, researchers, and service providers to effect change."

"developing a more inclusive and flexible language around mental health that bridges cultures and disciplines ..."

multiple locally-appropriate concepts

resources  - social, family, community

LMICs - 'workforce gap'

shift from institutionalised to community settings

security - conflict

advocacy

resources
$$$ income/welfare/micro-finances/
banking/digital access

legislation, policies,
strategies and services


*The paper also refers to "psychosocial disabilities".


My source (twitter):
https://twitter.com/PLOSGPH/status/1565066449798205440?s=20

Madill A, Bhola P, Colucci E, Croucher K, Evans A, et al. (2022) How can we mainstream mental health in research engaging the range of Sustainable Development Goals? A theory of change. PLOS Global Public Health 2(8): e0000837. https://doi.org/10.1371/journal.pgph.0000837